DynDom - Protein Domain Motions

Pseudomonas Aeruginosa Earp

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Pseudomonas Aeruginosa Earp
Conformer 1 (PDB)	6j7j (A)
Conformer 2 (PDB)	6j7l (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	322	0.57	0 - 194 203 - 209 211 - 213 245 - 246 255 - 382
2	42	0.52	195 - 202 210 - 210 214 - 244 247 - 248

Sequence

`________________________________________________________________________________________________________________________` `6j7j(A) : FQH-aSWDIFCSV----gDIGVTWRLARQLAAEHGQAVRLWVDEPQAFARICPRADPVAHVQCLDGVEVRAWGRPWAPVAAADVVIEAFACELPEAHRQA-rERKRPSLWLNLEYLSAEE` `:` `6j7l(A) : FQHMASWDIFCSVVDNYGDIGVTWRLARQLAAEHGQAVRLWVDEPQAFARICPRADPVAHVQCLDGVEVRAWGRPWAPVAAADVVIEAFACELPEAHRQAMRERKRPSLWLNLEYLSAEE` `________________________________________________________________________________________________________________________` `__________________________________________________________________________194_____202____209_213________________________` `6j7j(A) : WIGSCHALPSLQACGLSKYFFFPGFREPSGGLLREAGLLERRRRFQASVSAQDEFLASLGVRRKVGERLISLFAYENPALPGWLEQLRDARQPSLLLVPEGRVLADVADWLRVATLAVGD` `:` `6j7l(A) : WIGSCHALPSLQACGLSKYFFFPGFREPSGGLLREAGLLERRRRFQASVSAQDEFLASLGVRRKVGERLISLFAYENPALPGWLEQLRDARQPSLLLVPEGRVLADVADWLRVATLAVGD` `__________________________________________________________________________194_____202____209_213________________________` `____244_________________________________________________________________________________________________________________` `6j7j(A) : VHVRDALRVQVLPF-aQDDYDRLLWCCDLNAVRGEDSFVRAQWAGRPLLWHIY--hLAKLEAFLELYCAGLPADLAENLRTFWLAWNAGGGLAGAWEGLERQLPEWRREAQRWADEQG-r` `:` `6j7l(A) : VHVRDALRVQVLPFMAQDDYDRLLWCCDLNAVRGEDSFVRAQWAGRPLLWHIYRtHLAKLEAFLELYCAGLPADLAENLRTFWLAWNAGGGLAGAWEGLERQLPEWRREAQRWADEQGMR` `____244_________________________________________________________________________________________________________________` `_______________________` `6j7j(A) : PDLAARLVQFYADWLLEHHHHHH` `:` `6j7l(A) : PDLAARLVQFYADWLLEHHHHHH` `_______________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.0
Translation (A)	-0.2
Closure (%)	88.3
Bending Residues ( green )	194 - 196 202 - 203 209 - 211 213 - 214 244 - 255
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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