DynDom - Protein Domain Motions

Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Putative Enzyme Ydif
Conformer 1 (PDB)	2ahu (B)
Conformer 2 (PDB)	2ahv (C)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	366	0.37	7 - 276 287 - 290 302 - 302 309 - 320 325 - 330 337 - 373 378 - 380 385 - 411 448 - 463 476 - 478
2	130	0.6	284 - 286 291 - 301 303 - 308 321 - 324 331 - 336 374 - 377 381 - 384 412 - 447 464 - 475 479 - 526

Sequence

`________________________________________________________________________________________________________________________` `2ahu(B) : VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQ` `:` `2ahv(C) : VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQ` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2ahu(B) : TLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEV-yLDALVIAQAVHNNGGIV--qVQK-vKKATLHPKSVRIP` `:` `2ahv(C) : TLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIP` `________________________________________________________________________________________________________________________` `______________________________276_286____________301____308______317____324___330___336_____________________________373_` `2ahu(B) : GYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLDlPLNQRKLVARRALFE-rKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSgANVNTRAILD-tSQFDFYHGGGLDVC` `:` `2ahv(C) : GYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD-pLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGIT--aNVNTRAILDMTSQFDFYHGGGLDVC` `______________________________276_286____________301____308______317____324___330___336_____________________________373_` `377____384________________________411_________________________________447_____________463_________475___________________` `2ahu(B) : YLSFAEVDQHGNVGVHKFNGKI-gTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKD` `:` `2ahv(C) : YLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKD` `377____384________________________411_________________________________447_____________463_________475___________________` `___________________________________` `2ahu(B) : ILDK-dFTPVISPELKL-dERLFIDAA-gFVLPEA` `:` `2ahv(C) : ILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEA` `___________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	3.8
Translation (A)	-0.1
Closure (%)	99.5
Bending Residues ( green )	276 - 284 286 - 291 301 - 303 308 - 315 317 - 321 324 - 326 330 - 334 336 - 337 373 - 374 377 - 378 380 - 381 384 - 385 411 - 412 447 - 448 463 - 464 475 - 476 478 - 479
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

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