Putative Sugar Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Sugar Binding Protein
  Conformer 1
(PDB) 		6gq0 (A)
  Conformer 2
(PDB) 		6guq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 143 0.38   153 - 286   316 - 324
2 131 0.38   51 - 152   287 - 315

Sequence


           _______________________________________________________________________________________________________152______________ 
 6gq0(A) : KEAYHFVLVPEELDNDYWRLVEKGAKAAAKELGVDLEYIGPRQANIDEHLRILKKAAAAKVDGIITQGLTEAEFVPVINEITDKNIPVVTIDTDAPTSRRVAYVGTDNYYAGFLAGRALA 
         :                                                                                                                          
 6guq(A) : **AYHFVLVPEELDNDYWRLVEKGAKAAAKELGVDLEYIGPRQANIDEHLRILKKAAAAKVDGIITQGLTEAEFVPVINEITDKNIPVVTIDTDAPTSRRVAYVGTDNYYAGFLAGRALA 
           _______________________________________________________________________________________________________152______________ 

           ___________________________________________________________________________________________________________________284__ 
 6gq0(A) : EDTKGKATVAIITGSLTAAHQQLRVRGFEDAVRQEKGIRIVAIEESHITRVQAAEKAYTILKKHPDVNAFYGTSALDAIGVAKVVEQFHREQKTYIIGFDTLPETIRYLQKGTIAATVVQ 
         :                                                                                                                          
 6guq(A) : EDTKGKATVAIITGSLTAAHQQLRVRGFEDAVRQEKGIRIVAIEESHITRVQAAEKAYTILKKHPDVNAFYGTSALDAIGVAKVVEQFHREQKTYIIGFDTLPETIRYLQKGTIAATVVQ 
           ___________________________________________________________________________________________________________________284__ 

           __________________________315___________                                                                                 
 6gq0(A) : EPYEMGYKAVKMMAEIVAGKDVPVVTNTETKVIRKKDLPL                                                                                 
         :                                                                                                                          
 6guq(A) : EPYEMGYKAVKMMAEIVAGKDVPVVTNTETKVIRKKDLPL                                                                                 
           __________________________315___________                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.2
Translation
(A) 		-0.4
Closure
(%) 		38.4
Bending Residues
( green ) 		  152 - 153
  284 - 287
  315 - 318
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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