Redox-Sensing Transcriptional Repressor Rex

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Redox-Sensing Transcriptional Repressor Rex
  Conformer 1
(PDB) 		5zz5 (A)
  Conformer 2
(PDB) 		5zz5 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 142 1.78   11 - 16   45 - 47   72 - 204
2 23 1.17   17 - 30   48 - 71

Sequence


           __11_________________30_______________________________________71________________________________________________________ 
 5zz5(A) : *VSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKRGVGYNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAP 
         :                                                                                                                          
 5zz5(D) : PVSKRLVSYYMCLERLLDEGVEVVs-EELARRLDLKASQIR---------------yNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAP 
           __11_________________30_______________________________________71________________________________________________________ 

           _________________________________________________________________________________                                        
 5zz5(A) : GLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKVSVPVENIDITASLRVLTFEIVRRNS                                        
         :                                                                                                                          
 5zz5(D) : GLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKVSVPVENIDITASLRVLTFEIVRR**                                        
           _________________________________________________________________________________                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		28.6
Translation
(A) 		1.0
Closure
(%) 		81.6
Bending Residues
( green ) 		  11 - 17
  30 - 65
  71 - 78
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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