Redox-Sensing Transcriptional Repressor Rex 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Redox-Sensing Transcriptional Repressor Rex 1
  Conformer 1
(PDB) 		5zz6 (B)
  Conformer 2
(PDB) 		5zz6 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 126 0.64   80 - 205
2 58 0.78   11 - 79

Sequence


           ________________________________________________________________________77______________________________________________ 
 5zz6(B) : KIPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKRGVGYNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGK 
         :                                                                                                                          
 5zz6(D) : *****VSKRLVSYYMCLERLLDEGVEV--sEELAR-----aSQIRKDLSYFGEFGKR----nVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGK 
           ________________________________________________________________________77______________________________________________ 

           ____________________________________________________________________________________                                     
 5zz6(B) : EAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKVSVPVENIDITASLRVLTFEIVRRN                                     
         :                                                                                                                          
 5zz6(D) : EAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKVSVPVENIDITASLRVLTFEIVRRN                                     
           ____________________________________________________________________________________                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		36.8
Translation
(A) 		-0.1
Closure
(%) 		39.9
Bending Residues
( green ) 		  77 - 80
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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