Ribose Abc Transporter, Periplasmic Ribose- Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribose Abc Transporter, Periplasmic Ribose- Binding Protein
  Conformer 1
(PDB) 		2fn8 (A)
  Conformer 2
(PDB) 		2fn9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 147 0.39   105 - 245   274 - 279
2 129 0.55   4 - 104   246 - 273

Sequence


           ___________________________________________________________________________________________________102__________________ 
 2fn8(A) : KGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGLAVAQIYSDNYYGGVLMGEYFVKF 
         :                                                                                                                          
 2fn9(A) : *GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGLAVAQIYSDNYYGGVLAGEYFVKF 
           ___________________________________________________________________________________________________102__________________ 

           ________________________________________________________________________________________________________________________ 
 2fn8(A) : LKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGKQIVA 
         :                                                                                                                          
 2fn9(A) : LKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGKQIVA 
           ________________________________________________________________________________________________________________________ 

           _244________________________271_____________________                                                                     
 2fn8(A) : TIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRENIDKYTAYGRK                                                                     
         :                                                                                                                          
 2fn9(A) : TIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRE***********                                                                     
           _244________________________271_____________________                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		28.3
Translation
(A) 		0.9
Closure
(%) 		99.6
Bending Residues
( green ) 		  102 - 105
  244 - 249
  271 - 275
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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