Sensor Protein Cpxa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sensor Protein Cpxa
  Conformer 1
(PDB) 		4biu (A)
  Conformer 2
(PDB) 		4biu (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 142 0.68   292 - 298   302 - 404   422 - 453
2 103 1.81   190 - 291   299 - 301   418 - 421

Sequence


           _____________________________________________________________________________________________________291_______301______ 
 4biu(A) : KPARKLKNAADEVAQGNLRQHPE------eFLAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQKNALVSET 
         :                                                                                                                          
 4biu(C) : KPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQKNALVSET 
           _____________________________________________________________________________________________________291_______301______ 

           ___________________________________________________________________________________________401__________________________ 
 4biu(A) : IKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDgLGLAIVETAIQQHRGWVKA 
         :                                                                                                                          
 4biu(C) : IKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFY---gLGLAIVETAIQQHRGWVKA 
           ___________________________________________________________________________________________401__________________________ 

           ___________________                                                                                                      
 4biu(A) : EDSPLGGLRLVIWLPLYK*                                                                                                      
         :                                                                                                                          
 4biu(C) : EDSPLGGLRLVIWLPLYKR                                                                                                      
           ___________________                                                                                                      

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.9
Translation
(A) 		2.5
Closure
(%) 		92.5
Bending Residues
( green ) 		  291 - 292
  294 - 299
  301 - 306
  401 - 422
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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