Slr1257 Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Slr1257 Protein
  Conformer 1
(PDB) 		1ii5 (A)
  Conformer 2
(PDB) 		1iiw (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 169 0.2   6 - 112   114 - 115   125 - 131   159 - 177   183 - 221
2 42 0.25   113 - 113   116 - 124   132 - 158   178 - 182

Sequence


           _______________________________________________________________________________________________________111__________124_ 
 1ii5(A) : GSAMALKVGVVGNPPFVFYGaFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDT 
         :                                                                                                                          
 1iiw(A) : GSAMALKVGVVGNPPFVFYGaFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDT 
           _______________________________________________________________________________________________________111__________124_ 

           __130________________________157_________________177__182____________________________________________                    
 1ii5(A) : TAVDWANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLG                    
         :                                                                                                                          
 1iiw(A) : TAVDWANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLG                    
           __130________________________157_________________177__182____________________________________________                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.5
Translation
(A) 		0.0
Closure
(%) 		84.8
Bending Residues
( green ) 		  111 - 116
  124 - 125
  130 - 132
  157 - 161
  177 - 180
  182 - 183
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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