Solute-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Solute-Binding Protein
  Conformer 1
(PDB) 		4r6k (A)
  Conformer 2
(PDB) 		5z6b (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 225 0.4   127 - 284   338 - 404
2 164 0.57   16 - 126   285 - 337

Sequence


           ________________________________________________________________________________________________________________125_____ 
 4r6k(A) : EDVTLRIAWWGGQPRHDYTTKVIELYEKKNPHVHIEAEFANWDDYWKKLAPMSAAGQLPDVIQMDTAYLAQYGKKNQLEDLTPYTKDGTIDVSSIDENMLSGGKIDNKLYGFTLGVNVLS 
         :                                                                                                                          
 5z6b(A) : ***TLRIAWWGGQPRHDYTTKVIELYEKKNPHVHIEAEFANWDDYWKKLAPMSAAGQLPDVIQMDTAYLAQYGKKNQLEDLTPYTKDGTIDVSSIDENMLSGGKIDNKLYGFTLGVNVLS 
           ________________________________________________________________________________________________________________125_____ 

           ________________________________________________________________________________________________________________________ 
 4r6k(A) : VIANEDLLKKAGVSINQENWTWEDYEKLAYDLQEKAGVYGSNGMHPPDIFFPYYLRTKGERFYKEDGTGLAYQDDQLFVDYFERQLRLVKAKTSPTPDESAQIKGMEDDFIVKGKSAITW 
         :                                                                                                                          
 5z6b(A) : VIANEDLLKKAGVSINQENWTWEDYEKLAYDLQEKAGVYGSNGMHPPDIFFPYYLRTKGERFYKEDGTGLAYQDDQLFVDYFERQLRLVKAKTSPTPDESAQIKGMEDDFIVKGKSAITW 
           ________________________________________________________________________________________________________________________ 

           ______________________________283______________________________________________332______________________________________ 
 4r6k(A) : NYSNQYLGFARLTDSPLSLYLPPEQMQEKALTLKPSMLFSIPKSSEHKKEAAKFINFFVNNEEANQLIKGERGVPVSDKVADAIKPKLNEEETNIVEYVETASKNISKADPPEPVGSAEV 
         :                                                                                                                          
 5z6b(A) : NYSNQYLGFARLTDSPLSLYLPPEQMQEKALTLKPSMLFSIPKSSEHKKEAAKFINFFVNNEEANQLIKGERGVPVSDKVADAIKPKLNEEETNIVEYVETASKNISKADPPEPVGSAEV 
           ______________________________283______________________________________________332______________________________________ 

           ____________________________________                                                                                     
 4r6k(A) : IKLLKDTSDQILYQKVSPEKAAKTFRKKANEILERN                                                                                     
         :                                                                                                                          
 5z6b(A) : IKLLKDTSDQILYQKVSPEKAAKTFRKKANEILERN                                                                                     
           ____________________________________                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		42.9
Translation
(A) 		-1.0
Closure
(%) 		98.5
Bending Residues
( green ) 		  125 - 127
  283 - 285
  332 - 340
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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