Splicing Factor, Proline- And Glutamine-Rich

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Splicing Factor, Proline- And Glutamine-Rich
  Conformer 1
(PDB) 		5wpa (A)
  Conformer 2
(PDB) 		4wii (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 83 0.45   370 - 452
2 77 0.67   293 - 369
3 33 0.84   478 - 510

Sequence


           ________________________________________________________________________________________366_____________________________ 
 5wpa(A) : ***************KTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFG 
         :                                                                                                                          
 4wii(A) : EGFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFG 
           ________________________________________________________________________________________366_____________________________ 

           _____________________________________________________451________________________________________________________________ 
 5wpa(A) : PIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPE-------------eTPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDA 
         :                                                                                                                          
 4wii(A) : PIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDA 
           _____________________________________________________451________________________________________________________________ 

           _____________                                                                                                            
 5wpa(A) : KDKLESEMEDAY*                                                                                                            
         :                                                                                                                          
 4wii(A) : KDKLESEMEDAYH                                                                                                            
           _____________                                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.4
Translation
(A) 		0.5
Closure
(%) 		100.0
Bending Residues
( green ) 		  366 - 372
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		9.0
Translation
(A) 		1.6
Closure
(%) 		15.7
Bending Residues
( green ) 		  451 - 478
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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