Succinyl-Coa Synthetase, Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Succinyl-Coa Synthetase, Beta Chain
  Conformer 1
(PDB) 		1euc (B)
  Conformer 2
(PDB) 		2fp4 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 295 1.0   7 - 20   109 - 390
2 92 0.37   3 - 6   21 - 108

Sequence


           _____5_____________20____________________________________________________________________________________107____________ 
 1euc(B) : MVNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAI 
         :                                                                                                                          
 2fp4(B) : *MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAI 
           _____5_____________20____________________________________________________________________________________107____________ 

           ________________________________________________________________________________________________________________________ 
 1euc(B) : LMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAM 
         :                                                                                                                          
 2fp4(B) : LMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAM 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1euc(B) : DDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVN-aIIANGITKACRELELKVPLVVRLEGT 
         :                                                                                                                          
 2fp4(B) : DDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 
           ________________________________________________________________________________________________________________________ 

           __________________________________                                                                                       
 1euc(B) : NVHEAQNILTNSGLPITSAVDLEDAAKKAVASVT                                                                                       
         :                                                                                                                          
 2fp4(B) : NVHEAQNILTNSGLPITSAVDLEDAAKKAVASVT                                                                                       
           __________________________________                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.4
Translation
(A) 		0.3
Closure
(%) 		68.5
Bending Residues
( green ) 		  5 - 7
  20 - 21
  107 - 109
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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