Sugar Abc Transporter, Periplasmic Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sugar Abc Transporter, Periplasmic Sugar-Binding Protein
  Conformer 1
(PDB) 		7c6f (A)
  Conformer 2
(PDB) 		7c67 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 246 1.34   117 - 295   347 - 366   368 - 414
2 164 0.48   5 - 116   296 - 346   367 - 367

Sequence


           _________________________________________________________________________________________________________________116____ 
 7c6f(A) : *KTLEVWIMPNSPQPAEDFKALVAPFEKAHGVEVKVTVLDWGVAWTKITTAATSGVGPDLTQLGTTWVGAISAMGVLEPVDDVLEALGGEKAYLPAVWRTTRLEGARQATAVPWFSELRA 
         :                                                                                                                          
 7c67(A) : QKTLEVWIMPNSPQPAEDFKALVAPFEKAHGVEVKVTVLDWGVAWTKITTAATSGVGPDLTQLGTTWVGAISAMGVLEPVDDVLEALGGEKAYLPAVWRTTRLEGARQATAVPWFSELRA 
           _________________________________________________________________________________________________________________116____ 

           ________________________________________________________________________________________________________________________ 
 7c6f(A) : FYYRTDALKAAGVNPAEMFASWQGFEAGLARLKASSFRDPETKAPLAPLCTPGRTP-RTLHNAAPWIWGAGGEIVRQAGGRWQSALNSPESLEGLYFFLSLAQKGYVPAESLEKNTAQIE 
         :                                                                                                                          
 7c67(A) : FYYRTDALKAAGVNPAEMFASWQGFEAGLARLKASSFRDPETKAPLAPLCTPGKNSWDVLHNAAPWIWGAGGEIVRQAGGRWQSALNSPESLEGLYFFLSLAQKGYVPAESLEKNTAQIE 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________295_________________________________________339____________________ 
 7c6f(A) : ADFQAGKCAVFASGPWMIQRAQVPEAKGGFAERTAAKNLGVAPYPAGPKGRYTFFGGSNLALFNFSKNKPLAKELLKYLGGPEAQVRYAQMTGMLPALRSAWSDPSFQQNPLLRTFIQAA 
         :                                                                                                                          
 7c67(A) : ADFQAGKCAVFASGPWMIQRAQVPEAKGGFAERTAAKNLGVAPYPAGPKGRYTFFGGSNLALFNFSKNKPLAKELLKYLGGPEAQVRYAQMTGMLPALRSAWSDPSFQQNPLLRTFIQAA 
           _____________________________________________________296_________________________________________340____________________ 

           ____366___________________________________________________                                                               
 7c6f(A) : QFGRTYPSLAGWGGVENLAVQHLGMAWDLVAQGRLTREALKDLMDKASAAINQALRHH                                                               
         :                                                                                                                          
 7c67(A) : QFGRTYPSLAGWGGVENLAVQHLGMAWDLVAQGRLTREALKDLMDKASAAINQALRH*                                                               
           ____367___________________________________________________                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.0
Translation
(A) 		0.6
Closure
(%) 		100.0
Bending Residues
( green ) 		  116 - 117
  295 - 296
  339 - 347
  366 - 368
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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