Tryptophan Synthase Beta Chain 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophan Synthase Beta Chain 1
  Conformer 1
(PDB) 		1wdw (B)
  Conformer 2
(PDB) 		6am7 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 265 0.54   3 - 17   21 - 32   37 - 42   47 - 84   181 - 191   197 - 380
2 112 0.43   18 - 20   33 - 36   43 - 46   85 - 180   192 - 196

Sequence


           _______________17_20__________32__36____42__46____________________________________84____________________________________ 
 1wdw(B) : MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGAL 
         :                                                                                                                          
 6am7(A) : MWFGEFGGQYVPETLVGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAH-tNNAIGQALLAKLMGKTRLIAETGAGQHGVATAMAGAL 
           _______________17_20__________32__36____42__46____________________________________84____________________________________ 

           _________________________________________________________180________191__196____________________________________________ 
 1wdw(B) : LGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 
         :                                                                                                                          
 6am7(A) : LGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 
           _________________________________________________________180________191__196____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1wdw(B) : NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM 
         :                                                                                                                          
 6am7(A) : NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDYPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM 
           ________________________________________________________________________________________________________________________ 

           _________________________                                                                                                
 1wdw(B) : SRDEIIIVNLSGRGDKDLDIVLKVS                                                                                                
         :                                                                                                                          
 6am7(A) : SRDEIIIVNLSGRGDKDLDIVLKA*                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.8
Translation
(A) 		0.1
Closure
(%) 		40.8
Bending Residues
( green ) 		  17 - 18
  20 - 21
  32 - 33
  36 - 37
  42 - 43
  46 - 47
  84 - 85
  180 - 181
  191 - 192
  196 - 197
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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