Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Galactose 4-Epimerase
  Conformer 1
(PDB) 		1ek6 (B)
  Conformer 2
(PDB) 		4wok (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 288 1.95   4 - 223   240 - 276   278 - 296   309 - 339
2 29 1.27   224 - 239   277 - 277   297 - 308

Sequence


           ________________________________________________________________________________________________________________________ 
 1ek6(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 
         :                                                                                                                          
 4wok(A) : ANNVLVVGGAGFIGSHTAKLLAGQGYAPVVYDNLSTGHQSAV--------------RWGDFVEGDILDQARLVETMEKYAPVAVIHFAASAYVGESVEDPAKYYRNNVGGTQSLLDACRL 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________223_____________239 
 1ek6(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGE--DPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 
         :                                                                                                                          
 4wok(A) : TRTQNVIFSSSCATYGVPSRLPIGEGEAQNP-INPYGRTKLIAEHMLADYAVA-YGLRYVALRYFNASGADIDGELGEKHDPE---THLIPRAMMAAAGRLDVLEVYGDDYETPDGTCIR 
           _____________________________________________________________________________________________________207_____________223 

           __________________________________276_________________296_________308_______________________________________             
 1ek6(B) : DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGW-TAALGLDRMCEDLWRWQKQNPSGFGT             
         :                                                                                                                          
 4wok(A) : DYIHVTDLARAHVLAVEHLKEAGGNLAVNLGTGRGTSIREIVQSIGRLTGRSVPVAMRARRAGDPPALYADPALAAEKLGFHTVYSDLDTIIRTAAPHFGLEVR****             
           __________________________________260_________________280_________292_______________________________________             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.5
Translation
(A) 		-0.1
Closure
(%) 		88.5
Bending Residues
( green ) 		  223 - 224
  239 - 240
  276 - 278
  296 - 297
  308 - 309
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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