Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Galactose 4-Epimerase
  Conformer 1
(PDB) 		1ek6 (A)
  Conformer 2
(PDB) 		1hzj (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 242 0.38   5 - 89   110 - 151   162 - 187   190 - 195   202 - 204   207 - 208   215 - 220   240 - 280   308 - 338
2 30 0.45   90 - 109   152 - 161
3 62 0.32   188 - 189   196 - 201   205 - 206   209 - 214   221 - 239   281 - 307

Sequence


           _______________________________________________________________________________________89_________________109___________ 
 1ek6(A) : MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 
         :                                                                                                                          
 1hzj(B) : *AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 
           _______________________________________________________________________________________89_________________109___________ 

           ____________________________151_______161_______________________187_____195__200_204_______214___220________________239_ 
 1ek6(A) : AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 
         :                                                                                                                          
 1hzj(B) : AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 
           ____________________________151_______161_______________________187_____195__200_204_______214___220________________239_ 

           _____________________________________280________________________307_______________________________________               
 1ek6(A) : YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT               
         :                                                                                                                          
 1hzj(B) : YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT               
           _____________________________________280________________________307_______________________________________               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.2
Translation
(A) 		-0.3
Closure
(%) 		66.9
Bending Residues
( green ) 		  89 - 91
  109 - 110
  151 - 152
  161 - 162
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		2.9
Translation
(A) 		-0.2
Closure
(%) 		86.7
Bending Residues
( green ) 		  187 - 190
  195 - 196
  200 - 202
  204 - 209
  214 - 215
  220 - 221
  239 - 240
  280 - 281
  307 - 308
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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