Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Galactose 4-Epimerase
  Conformer 1
(PDB) 		1hzj (B)
  Conformer 2
(PDB) 		1ek5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 46 0.5   141 - 143   210 - 224   239 - 241   275 - 295   309 - 310   328 - 329
2 268 0.91   4 - 140   144 - 209   242 - 274   311 - 327   330 - 344
3 27 0.48   225 - 238   296 - 308

Sequence


           ________________________________________________________________________________________________________________________ 
 1hzj(B) : *AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 
         :                                                                                                                          
 1ek5(A) : MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 
           ________________________________________________________________________________________________________________________ 

           _________________140_________________________________________________________200_____________________224____________239_ 
 1hzj(B) : AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 
         :                                                                                                                          
 1ek5(A) : AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 
           _________________140_________________________________________________________200_____________________224____________239_ 

           _______________________________274__________________295___________309_______________327___________________               
 1hzj(B) : YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT               
         :                                                                                                                          
 1ek5(A) : YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT               
           _______________________________274__________________295___________309_______________327___________________               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.9
Translation
(A) 		-0.2
Closure
(%) 		84.5
Bending Residues
( green ) 		  140 - 144
  200 - 210
  239 - 242
  274 - 275
  309 - 311
  327 - 330
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		10.3
Translation
(A) 		0.2
Closure
(%) 		96.1
Bending Residues
( green ) 		  224 - 225
  238 - 241
  295 - 296
  308 - 310
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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