DynDom - Protein Domain Motions

Udp-Glucose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-Glucose 4-Epimerase
Conformer 1 (PDB)	1i3m (A)
Conformer 2 (PDB)	1hzj (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	207	0.65	5 - 49 52 - 130 134 - 137 144 - 184 189 - 192 198 - 199 249 - 269 310 - 320
2	133	0.4	50 - 51 131 - 133 138 - 143 185 - 188 193 - 197 200 - 248 270 - 309 321 - 344

Sequence

`______________________________________________49________________________________________________________________________` `1i3m(A) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKA` `:` `1hzj(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA` `______________________________________________49________________________________________________________________________` `______130____137___143______________________________________184_188_192__197____________________________________________` `1i3m(A) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY` `:` `1hzj(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY` `______130____137___143______________________________________184_188_192__197____________________________________________` `____248__________________269_____________________________________309_____317_______________________________` `1i3m(A) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGTQA` `:` `1hzj(B) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT**` `____248__________________269_____________________________________309_____317_______________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.6
Translation (A)	-0.2
Closure (%)	98.5
Bending Residues ( green )	49 - 52 130 - 131 133 - 134 137 - 138 143 - 144 184 - 185 188 - 189 192 - 193 197 - 200 248 - 249 269 - 270 309 - 310 317 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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