Uracil-Dna Glycosylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uracil-Dna Glycosylase
  Conformer 1
(PDB) 		1akz  
  Conformer 2
(PDB) 		1ssp (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 118 0.8   86 - 157   160 - 161   195 - 234   246 - 249
2 99 0.63   158 - 159   162 - 194   235 - 245   250 - 302

Sequence


           _________________________________________________________________________157__________________________________194_______ 
 1akz    : MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVL 
         :                                                                                                                          
 1ssp(E) : MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVL 
           _________________________________________________________________________157__________________________________194_______ 

           ______________________________234________245_249_______________________________________________________                  
 1akz    : LLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL                  
         :                                                                                                                          
 1ssp(E) : LLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL                  
           ______________________________234________245_249_______________________________________________________                  

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.6
Translation
(A) 		-0.2
Closure
(%) 		95.1
Bending Residues
( green ) 		  157 - 162
  194 - 195
  234 - 235
  245 - 246
  249 - 256
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download