Vitamin B12 Transport Protein Btuf

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Vitamin B12 Transport Protein Btuf
  Conformer 1
(PDB) 		1n2z (A)
  Conformer 2
(PDB) 		5ovw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 137 0.66   24 - 150   242 - 242   244 - 252
2 98 1.12   157 - 241   243 - 243   253 - 264

Sequence


           ________________________________________________________________________________________________________________________ 
 1n2z(A) : AAPRVITLSPANTELAFAAGITPVGVSSYSDYPPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLD 
         :                                                                                                                          
 5ovw(A) : AAPRVITLSPANTELAFAAGITPVGVSSYSDYPPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLD 
           ________________________________________________________________________________________________________________________ 

           ______150________________________________________________________________________________________241________252_________ 
 1n2z(A) : QYAQLKAQYADKPKKRVFLQFGINPPFTSGKESIQNQVLEVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLTSDWFERASPRIILAAQQLCNA 
         :                                                                                                                          
 5ovw(A) : QYAQLKAQYADKPKKRVFLQFGINPPFTSGKESIQNQVLEVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLTSDWFERASPRIILAAQQLCNA 
           ______150________________________________________________________________________________________241________252_________ 

           _____                                                                                                                    
 1n2z(A) : LSQVD                                                                                                                    
         :                                                                                                                          
 5ovw(A) : LSQVD                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.0
Translation
(A) 		-0.4
Closure
(%) 		88.6
Bending Residues
( green ) 		  150 - 157
  241 - 244
  252 - 253
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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