Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB) 		2v52 (B)
  Conformer 2
(PDB) 		8a2r (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 197 0.72   139 - 335
2 146 0.64   8 - 138   336 - 364

Sequence


           ________________________________________________________________________________________________________________________ 
 2v52(B) : DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR------kDSYVGDEAQS---iLTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 
         :                                                                                                                          
 8a2r(C) : ***TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMqKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 
           ________________________________________________________________________________________________________________________ 

           _______136______________________________________________________________________________________________________________ 
 2v52(B) : FNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ 
         :                                                                                                                          
 8a2r(C) : FNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ 
           _______136______________________________________________________________________________________________________________ 

           ______________________________________________________________________________________335_______________________________ 
 2v52(B) : VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAG 
         :                                                                                                                          
 8a2r(C) : VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAG 
           ______________________________________________________________________________________335_______________________________ 

           _________                                                                                                                
 2v52(B) : PSIVHRKCF                                                                                                                
         :                                                                                                                          
 8a2r(C) : PSIVHRKCF                                                                                                                
           _________                                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.4
Translation
(A) 		0.0
Closure
(%) 		36.6
Bending Residues
( green ) 		  136 - 139
  335 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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