Envelope Glycoprotein Gp160

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Envelope Glycoprotein Gp160
  Conformer 1
(PDB) 		4tvp (G)
  Conformer 2
(PDB) 		2b4c (G)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 241 2.21   89 - 111   210 - 297   330 - 423   439 - 487
2 42 8.05   112 - 202   424 - 438

Sequence


           ___________________________________________________________________________108__________________________________________ 
 4tvp(G) : AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCS 
         :                                                                                                                          
 2b4c(G) : *****************************************************VVLENVTEHFNMWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVGAG-------------------- 
           ___________________________________________________________________________108__________________________________________ 

           ________________________________________202_____________________________________________________________________________ 
 4tvp(G) : FNMTTELRDKKQKVYSLFYRLDVVQINsNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITN 
         :                                                                                                                          
 2b4c(G) : -----------------------------------SCDTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKTFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFTN 
           ________________________________________202_____________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4tvp(G) : NAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWI---- 
         :                                                                                                                          
 2b4c(G) : NAKTIIVQLKESVEINCTRPNQNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISRAKWNDTLKQIVIKLREQFENKTIV-FNHSSGGDPEIVMHSFNCGGEFFYCNSAQLFNSTWNNNTE 
           ________________________________________________________________________________________________________________________ 

           ________________423____________438___________________________________________________________________                    
 4tvp(G) : -SNn---DSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV                    
         :                                                                                                                          
 2b4c(G) : GSNNTEGNTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGINENGTEIFRPGGGDMRDNWRSELYKYKVVKIE*************                    
           ________________423____________438___________________________________________________________________                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		60.8
Translation
(A) 		-3.5
Closure
(%) 		40.3
Bending Residues
( green ) 		  108 - 112
  202 - 212
  423 - 424
  438 - 439
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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