Glutamine Abc Transporter Permease And Substrate Binding Protein Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamine Abc Transporter Permease And Substrate Binding Protein Protein
  Conformer 1
(PDB) 		4kpt (A)
  Conformer 2
(PDB) 		4la9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 189 0.24   31 - 138   150 - 160   179 - 248
2 29 0.13   139 - 149   161 - 178

Sequence


           ______________________________________________________________________________________________________________138_______ 
 4kpt(A) : ***TVKIASDSSYAPFEFQNGQKKWVGIDVDIMQEVAKINDWKLEMSYPGFDAALQNLKAGQVDGIIAGMTITDERKETFDFSNPYYTSALTIATTKDSKLSDYSDLKGKAVGAKNGTAA 
         :                                                                                                                          
 4la9(A) : AETTVKIASDSSYAPFEFQNGQKKWVGIDVDIMQEVAKINDWKLEMSYPGFDAALQNLKAGQVDGIIAGMTITDERKETFDFSNPYYTSALTIATTKDSKLSDYSDLKGKAVGAKNGTAA 
           ______________________________________________________________________________________________________________138_______ 

           _149_______159________________178_________________________________________________________________________               
 4kpt(A) : QTWLQENQKKYGYTIKTYSDGVHMFAALSSGNIAGAMDEVPVISYAMKQGQDLAMNFPSISLPGGYGFAVMKGKNSTLVDGFNKALAEMKSNGDYDKILKKYGITA               
         :                                                                                                                          
 4la9(A) : QTWLQENQKKYGYTIKTYSDGVHMFAALSSGNIAGAMDEVPVISYAMKQGQDLAMNFPSISLPGGYGFAVMKGKNSTLVDGFNKALAEMKSNGDYDKILKKYGITA               
           _149_______159________________178_________________________________________________________________________               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.8
Translation
(A) 		0.0
Closure
(%) 		6.9
Bending Residues
( green ) 		  138 - 139
  149 - 150
  159 - 161
  178 - 179
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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