Iron Transport Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Iron Transport Protein
  Conformer 1
(PDB) 		2pt2 (A)
  Conformer 2
(PDB) 		2pt1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 173 0.63   142 - 278   310 - 310   314 - 315   324 - 335   338 - 358
2 139 0.74   47 - 141   279 - 309   311 - 313   316 - 323   336 - 337

Sequence


           _______________________________________________________________________________________________141______________________ 
 2pt2(A) : *QEINLYSSRHYNTDNELYAKFTAETGIKVNLIEGKADELLERIKSEGANSPADVLLTVDLARLWRAEEDGIFQPVQSEILETNVPEYLRSPDGMWFGFTKRARVIMYNKGKVKPEELST 
         :                                                                                                                          
 2pt1(A) : QQEINLYSSRHYNTDNELYAKFTAETGIKVNLIEGKADELLERIKSEGANSPADVLLTVDLARLWRAEEDGIFQPVQSEILETNVPEYLRSPDGMWFGFTKRARVIMYNKGKVKPEELST 
           _______________________________________________________________________________________________141______________________ 

           ________________________________________________________________________________________________________________278_____ 
 2pt2(A) : YEELADPKWKGRVIIRSSSNEYNQSLVASLVVADGEESTLAWAKGFVSNFAREPQGNDTAQIEAVSSGEADLTLANTYYMGRLLESEDPAQKAIAENVGVFFPNQEGRGTHVNVSGVGVV 
         :                                                                                                                          
 2pt1(A) : YEELADPKWKGRVIIRSSSNEYNQSLVASLVVADGEESTLAWAKGFVSNFAREPQGNDTAQIEAVSSGEADLTLANTYYMGRLLESEDPAQKAIAENVGVFFPNQEGRGTHVNVSGVGVV 
           ________________________________________________________________________________________________________________278_____ 

           _______________________309_313_______323_________335_________________________                                            
 2pt2(A) : KTAPNREGAVKFIEFLVSEPAQAFLAQNNYEYPVLAGVPLNKSVASFGEFKSDTTSLDKLGPALAPATKIMNEAGWK                                            
         :                                                                                                                          
 2pt1(A) : KTAPNREGAVKFIEFLVSEPAQAFLAQNNYEYPVLAGVPLNKSVASFGEFKSDTTSLDKLGPALAPATKIMNEAGWK                                            
           _______________________309_313_______323_________335_________________________                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.7
Translation
(A) 		-0.1
Closure
(%) 		83.9
Bending Residues
( green ) 		  141 - 142
  278 - 279
  309 - 311
  313 - 316
  323 - 324
  335 - 343
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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