Lysozyme (E.C.3.2.1.17)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysozyme (E.C.3.2.1.17)
  Conformer 1
(PDB) 		150l (C)
  Conformer 2
(PDB) 		150l (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 99 0.42   3 - 11   68 - 68   72 - 160
2 59 0.35   12 - 67   69 - 71

Sequence


           _________11______________________________________________________67__71_________________________________________________ 
 150l(C) : MNIFEILRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRM 
         :                                                                                                                          
 150l(D) : MNIFEILRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRM 
           _________11______________________________________________________67__71_________________________________________________ 

           __________________________________________                                                                               
 150l(C) : LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYK                                                                               
         :                                                                                                                          
 150l(D) : LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYK                                                                               
           __________________________________________                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.3
Translation
(A) 		-0.1
Closure
(%) 		96.3
Bending Residues
( green ) 		  11 - 12
  67 - 69
  71 - 72
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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