Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2)
  Conformer 1
(PDB) 		2nad (B)
  Conformer 2
(PDB) 		2nac (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 162 0.3   3 - 9   31 - 123   126 - 149   335 - 372
2 21 0.31   10 - 30
3 187 0.58   124 - 125   150 - 334

Sequence


           _______8____________________30__________________________________________________________________________________________ 
 2nad(B) : AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTA 
         :                                                                                                                          
 2nac(B) : AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTA 
           _______8____________________30__________________________________________________________________________________________ 

           123____________________146______________________________________________________________________________________________ 
 2nad(B) : GIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHAT 
         :                                                                                                                          
 2nac(B) : GIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHAT 
           123____________________146______________________________________________________________________________________________ 

           ___________________________________________________________________________________________334__________________________ 
 2nad(B) : REDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRP 
         :                                                                                                                          
 2nac(B) : REDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRP 
           ___________________________________________________________________________________________334__________________________ 

           _______________________                                                                                                  
 2nad(B) : IRDEYLIVQGGALAGTGAHSYSK                                                                                                  
         :                                                                                                                          
 2nac(B) : IRDEYLIVQGGALA*********                                                                                                  
           _______________________                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.1
Translation
(A) 		0.0
Closure
(%) 		99.3
Bending Residues
( green ) 		  8 - 10
  30 - 31
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		11.0
Translation
(A) 		0.2
Closure
(%) 		82.2
Bending Residues
( green ) 		  123 - 126
  146 - 150
  334 - 339
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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