Nad Dependent Epimerase/dehydratase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad Dependent Epimerase/dehydratase
  Conformer 1
(PDB) 		3wmx (A)
  Conformer 2
(PDB) 		3wmx (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 248 0.24   9 - 174   179 - 187   204 - 207   212 - 248   268 - 299
2 55 0.18   175 - 178   188 - 203   208 - 211   249 - 267   300 - 311

Sequence


           ________________________________________________________________________________________________________________________ 
 3wmx(A) : GKPKILIVGANGQIGSELALALAERYGRTNVITSDVVPTGRHVHLTHEMLNATDRGELATVVERHGITQVYLLAAALSATGEKAPQWAWNLNMTSLLNVLELARQTGLERVFWPSSIAAF 
         :                                                                                                                          
 3wmx(B) : **PKILIVGANGQIGSELALALAERYGRTNVITSDVVPTGRHVHLTHEMLNATDRGELATVVERHGITQVYLLAAALSATGEKAPQWAWNLNMTSLLNVLELARQTGLERVFWPSSIAAF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________174__________187_____________203_207_211________________________________ 
 3wmx(A) : GPTTPAGQTPQKTVMEPTTVYGISKQAGEGWCRWYHANHGVDVRSVRYPGLISHKTPPGGGTTDYAVDIFHAAVTGEPYTCFLKEDEALPMMYMPDAIRATIELMEAPADKLSERGSYNI 
         :                                                                                                                          
 3wmx(B) : GPTTPAGQTPQKTVMEPTTVYGISKQAGEGWCRWYHANHGVDVRSVRYPGLISHKTPPGGGTTDYAVDIFHAAVTGEPYTCFLKEDEALPMMYMPDAIRATIELMEAPADKLSERGSYNI 
           ________________________________________________174__________187_____________203_207_211________________________________ 

           __248________________267_____________________________299______________                                                   
 3wmx(A) : AGMSFTPAQIAAAIREQVPGFQIRYEPDYRQAIAQGWPDSIDDSVARADWGWKAQYGLKEMVADMLANLK                                                   
         :                                                                                                                          
 3wmx(B) : AGMSFTPAQIAAAIREQVPGFQIRYEPDYRQAIAQGWPDSIDDSVARADWGWKAQYGLKEMVADMLANLK                                                   
           __248________________267_____________________________299______________                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.4
Translation
(A) 		-0.1
Closure
(%) 		96.1
Bending Residues
( green ) 		  174 - 175
  177 - 185
  187 - 188
  203 - 204
  207 - 208
  211 - 212
  248 - 249
  267 - 268
  299 - 300
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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