N-Methyl-D-Aspartate Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name N-Methyl-D-Aspartate Receptor Subunit 1
  Conformer 1
(PDB) 		1pbq (A)
  Conformer 2
(PDB) 		1pb8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 172 0.83   7 - 144   241 - 243   245 - 287
2 97 0.49   145 - 240   244 - 244

Sequence


           ________________________________________________________________________________________________________________________ 
 1pbq(A) : *RLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTG-----vPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNE 
         :                                                                                                                          
 1pb8(A) : TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNrHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINTE 
           ________________________________________________________________________________________________________________________ 

           ___________144_____________________________________________________________________________________________240__________ 
 1pbq(A) : RAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 
         :                                                                                                                          
 1pb8(A) : RAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 
           ___________144_____________________________________________________________________________________________240__________ 

           __________________________________________                                                                               
 1pbq(A) : GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC**                                                                               
         :                                                                                                                          
 1pb8(A) : GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS                                                                               
           __________________________________________                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.8
Translation
(A) 		1.4
Closure
(%) 		95.4
Bending Residues
( green ) 		  144 - 146
  240 - 247
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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