Ns3 Helicase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ns3 Helicase
  Conformer 1
(PDB) 		5txg (A)
  Conformer 2
(PDB) 		2jls (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 284 1.15   169 - 211   219 - 310   410 - 429   456 - 594
2 132 1.14   212 - 218   311 - 409   430 - 455

Sequence


           __________________________________________________211___________________________________________________________________ 
 5txg(A) : VECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMT----------eIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSI 
         :                                                                                                                          
 2jls(A) : *YEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSV 
           __________________________________________________227___________________________________________________________________ 

           _____________________________310________________________________________________________________________________________ 
 5txg(A) : AARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISEMG 
         :                                                                                                                          
 2jls(A) : AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMG 
           _____________________________326________________________________________________________________________________________ 

           ________409___________________429_______________________455_____________________________________________________________ 
 5txg(A) : ANFKADRVIDSRRCLKPVIL-DG-ERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFV 
         :                                                                                                                          
 2jls(A) : ANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFV 
           ________425___________________447_______________________473_____________________________________________________________ 

           ____________________________________________________________________________________                                     
 5txg(A) : ELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR                                     
         :                                                                                                                          
 2jls(A) : ELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK                                     
           ____________________________________________________________________________________                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.6
Translation
(A) 		0.0
Closure
(%) 		100.0
Bending Residues
( green ) 		  211 - 219
  310 - 311
  409 - 410
  429 - 432
  455 - 456
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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