Outer Surface Protein A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Outer Surface Protein A
  Conformer 1
(PDB) 		2oy7 (A)
  Conformer 2
(PDB) 		2hkd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 106 0.66   56 - 63   78 - 89   97 - 182
2 47 0.86   30 - 55   64 - 77   90 - 96
3 158 0.68   183 - 340

Sequence


           __________________________55______63____________77__________89____95____________________________________________________ 
 2oy7(A) : NSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKSSTYEKFNEKGELSEKYITRADKSSTYE 
         :                                                                                                                          
 2hkd(A) : NSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKSSTEEKFNEKGELSEKKITRADKSSTEE 
           __________________________55______63____________77__________89____95____________________________________________________ 

           ________________________________182_____________________________________________________________________________________ 
 2oy7(A) : KFNEKGELSEKYITRADKSSTYEKFNEKGELSEKYITRADKSSTYEKFNEKGEVSEKYITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVS 
         :                                                                                                                          
 2hkd(A) : KFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVS 
           ________________________________182_____________________________________________________________________________________ 

           ___________________________________________________________________________                                              
 2oy7(A) : VELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK                                              
         :                                                                                                                          
 2hkd(A) : VELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK                                              
           ___________________________________________________________________________                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.2
Translation
(A) 		-0.1
Closure
(%) 		99.1
Bending Residues
( green ) 		  55 - 61
  63 - 64
  77 - 78
  89 - 90
  95 - 97
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		12.2
Translation
(A) 		-0.8
Closure
(%) 		99.4
Bending Residues
( green ) 		  182 - 183
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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