Ovotransferrin (Monoferric N-Terminal Half-Molecule) 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ovotransferrin (Monoferric N-Terminal Half-Molecule) 3
  Conformer 1
(PDB) 		1nnt  
  Conformer 2
(PDB) 		1nft (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 166 1.21   7 - 89   248 - 330
2 158 0.76   90 - 247

Sequence


           _____________________________________________________________________________82_________________________________________ 
 1nnt    : *SVIRWCTISSPEEKKCNNLRDLTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQAFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSA 
         :                                                                                                                          
 1nft(A) : KSVIRWCTVSSPEEKKCNNLRDLTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSA 
           _____________________________________________________________________________82_________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1nnt    : GWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSASCVPGATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQKDEYELLCLDGSRQPVDNYKTCN 
         :                                                                                                                          
 1nft(A) : GWNIPIGTLIHRGAIEWEGIESGSVEQAVAKFFSASCVPGATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQKDEYELLCLDGSRQPVDNYKTCN 
           ________________________________________________________________________________________________________________________ 

           246______________________________________________________________________________________                                
 1nnt    : WARVAAHAVVARDDNKVEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPSLMDSQLYLGFEYYSAIQSMR                                
         :                                                                                                                          
 1nft(A) : WARVAAHAVVARDDNKVEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPSLMDSQLYLGFEYYSAIQSMR                                
           246______________________________________________________________________________________                                

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		48.9
Translation
(A) 		-1.7
Closure
(%) 		87.3
Bending Residues
( green ) 		  82 - 91
  246 - 248
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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