Periplasmic Iron-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Periplasmic Iron-Binding Protein
  Conformer 1
(PDB) 		2voz (A)
  Conformer 2
(PDB) 		2vp1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 180 0.61   127 - 264   296 - 301   309 - 344
2 129 0.99   36 - 126   265 - 295   302 - 308

Sequence


           __________________________________________________________________________________________126___________________________ 
 2voz(A) : RTINLYSSRHYNTDDALYDAFGEVNLIEASAEELIERIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNERIPENLRHPDGLWYGFTQRARVLYYSRDRVNPADLSTYEALAD 
         :                                                                                                                          
 2vp1(A) : RTINLYSSRHYNTDDALYDAFGEVNLIEASAEELIERIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNERIPENLRHPDGLWYGFTQRARVLYYSRDRVNPADLSTYEALAD 
           __________________________________________________________________________________________126___________________________ 

           __________________________________________________________________________________________________________262___________ 
 2voz(A) : PQWRGKILVRPSSNVYNLSLTASRIAIHGEPETRRWLQGLVGNFARQPEGNDTAQIRAIAAGIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAP 
         :                                                                                                                          
 2vp1(A) : PQWRGKILVRPSSNVYNLSLTASRIAIHGEPETRRWLQGLVGNFARQPEGNDTAQIRAIAAGIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAP 
           __________________________________________________________________________________________________________262___________ 

           ________________292_________304__________________________________________                                                
 2voz(A) : NRDAAIAFLEYLASDDAQRYFAEGNNEYPVIPGVPIDPVLAAHGQLKGDPLNVSNLGRYQPDSARLMNEVGWQ                                                
         :                                                                                                                          
 2vp1(A) : NRDAAIAFLEYLASDDAQRYFAEGNNEYPVIPGVPIDPVLAAHGQLKGDPLNVSNLGRYQPDSARLMNEVGWQ                                                
           ________________292_________304__________________________________________                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.4
Translation
(A) 		-0.7
Closure
(%) 		73.0
Bending Residues
( green ) 		  126 - 128
  262 - 265
  292 - 302
  304 - 311
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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