Phosphoglucosamine Mutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglucosamine Mutase
  Conformer 1
(PDB) 		3i3w (B)
  Conformer 2
(PDB) 		3pdk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 360 2.27   5 - 369   403 - 404   422 - 426
2 62 2.32   370 - 402   405 - 421   427 - 440

Sequence


           ________________________________________________________________________________________________________________________ 
 3i3w(B) : *KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQK-NYPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFtVKH-RAAAGFVITA-hNKFTDNGIKLFSSNGFKL 
         :                                                                                                                          
 3pdk(A) : GKYFGTDGVRG-VANKELTPELAFKIGRFGGYVLTKDTDRPK-VIIGRDTRISGHMLEGALVAGLLSTGAEVMRLGVISTPGVAYLTKALDAQAGVMISASHNPVQDNGIKFFGSDGFKL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3i3w(B) : DDALEEEVE---DiDGDFIYQPQ-FKFGSYKILANAIDEYIESIYSRFAKFVNYKG-KVVVDCAHGAASHNFEALLDKFGINYVSIASNPDGLNINVGCGATCVSNIKKAVKEQKADLGI 
         :                                                                                                                          
 3pdk(A) : TDEQEAEIEALLDKEVDELPRPTGTNLGQVSDYFEGGQKYLQYIKQTVEE--DFSGLHIALDCAHGATSSLAPYLFADLEADISTMGTSPNGMNINDGVGSTHPEVLAELVKEKGADIGL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3i3w(B) : SLDGDADRIIIVDENGQEIDGDGILNILAQYSDICGGT--NGIVGT-QtN-sYENHYRANKIPFIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADK 
         :                                                                                                                          
 3pdk(A) : AFDGDGDRLIAVDEKGNIVDGDQIMFICAKYMKETGQLKHNTVVSTVMSNLGFYKALEANGITSDKTAVGDRYVMEEMKRGGYNLGGEQSGHIILLDYITTGDGMLSALQLVNIMKMTKK 
           ________________________________________________________________________________________________________________________ 

           ______________369_______________________________402________________421__426_________________                             
 3i3w(B) : PVSEFKLQGELq---QTLINVPLT-KKVAREDLQKVASDVNDVEKRLGNRGRVLLRPSGTEPVLRVv-EADDKSLATNEAEYLVEKVKQKL*                             
         :                                                                                                                          
 3pdk(A) : PLSE--LAGEMTKFPQLLVNVRVTDKKLALEN-EKIKEIIRVVEEEMNGDGRILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVKAEVG                             
           ______________372_______________________________405________________424__429_________________                             

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		29.7
Translation
(A) 		-0.5
Closure
(%) 		99.9
Bending Residues
( green ) 		  369 - 370
  402 - 405
  421 - 422
  426 - 427
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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