Poly(a) RNA Polymerase Protein Cid1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Poly(a) RNA Polymerase Protein Cid1
  Conformer 1
(PDB) 		4ud4 (A)
  Conformer 2
(PDB) 		4ud4 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 225 0.88   43 - 60   91 - 97   100 - 103   167 - 377
2 87 2.31   61 - 90   98 - 99   104 - 166

Sequence


           ________________57_______________________________90___________________________________________________________________16 
 4ud4(A) : SHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEGFEGAFLQAARIPIIKLTSDgFGASFQCDIG 
         :                                                                                                                          
 4ud4(B) : *HKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEGFEGAFLQAARIPIIKLT-----aSFQCDIG 
           ________________57_______________________________90___________________________________________________________________16 

           3_______________________________________________________________________________________________________________________ 
 4ud4(A) : FNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFAFYAYA 
         :                                                                                                                          
 4ud4(B) : FNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFAFYAYA 
           3_______________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________                                    
 4ud4(A) : FEPREKVVTFRRPDGYLTKQEKGWTkDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEAPI*                                    
         :                                                                                                                          
 4ud4(B) : FEPREKVVTFRRPDGYLTKQEKGWT--rYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEAPIP                                    
           _____________________________________________________________________________________                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		30.3
Translation
(A) 		-0.4
Closure
(%) 		75.9
Bending Residues
( green ) 		  57 - 61
  90 - 104
  163 - 172
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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