Protein Rdmb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein Rdmb
  Conformer 1
(PDB) 		1xdu (A)
  Conformer 2
(PDB) 		1xds (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 169 2.66   12 - 161   288 - 313   340 - 346
2 150 1.18   162 - 287   314 - 339   347 - 355

Sequence


           ________________________________________________________________________________________________________________________ 
 1xdu(A) : LEPTDQDLDVLLKNLGNLVTPaLRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKgRPLRPTRLGlLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRT 
         :                                                                                                                          
 1xds(A) : LEPTDQDLDVLLKNLGNLVTPaLRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE--rPLRPTRLGlLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRT 
           ________________________________________________________________________________________________________________________ 

           __________________________161___________________________________________________________________________________________ 
 1xdu(A) : GRPAYAGRYGRPFWEDLSADVALADSFDALsCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGlAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 
         :                                                                                                                          
 1xds(A) : GRPAYAGRYGRPFWEDLSADVALADSFDALsCD---------dAYDWSAVRHVLDVGGGNGGlAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 
           __________________________161___________________________________________________________________________________________ 

           ______________________________287_____________________313_____________________337____________________                    
 1xdu(A) : SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRaD-------RFFSTLLDLRlTFgGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS                    
         :                                                                                                                          
 1xds(A) : SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRlTFgGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS                    
           ______________________________287_____________________313_____________________337____________________                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.1
Translation
(A) 		-1.0
Closure
(%) 		97.8
Bending Residues
( green ) 		  161 - 182
  287 - 299
  313 - 314
  337 - 347
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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