Recoverin (Calcium Sensor In Vision)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Recoverin (Calcium Sensor In Vision)
  Conformer 1
(PDB) 		1rec  
  Conformer 2
(PDB) 		1omv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 153 0.33   11 - 159   169 - 170   174 - 174   189 - 194
2 26 0.34   160 - 168   171 - 173   175 - 188

Sequence


           ________________________________________________________________________________________________________________________ 
 1rec    : **LSKEILEELQLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSF--gTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAI 
         :                                                                                                                          
 1omv(A) : GALSKEILEELQLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDdGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAI 
           ________________________________________________________________________________________________________________________ 

           ___________________________159______168__173____________188__________                                                    
 1rec    : FKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQKVKEKLK                                                    
         :                                                                                                                          
 1omv(A) : FKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQKVKEKL*                                                    
           ___________________________159______168__173____________188__________                                                    

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.2
Translation
(A) 		0.2
Closure
(%) 		8.9
Bending Residues
( green ) 		  159 - 160
  168 - 171
  173 - 175
  188 - 189
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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