Shikimate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Shikimate Dehydrogenase
  Conformer 1
(PDB) 		2hk8 (F)
  Conformer 2
(PDB) 		2hk9 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 131 0.3   3 - 108   112 - 112   239 - 262
2 129 0.42   109 - 111   113 - 238

Sequence


           _______________________________________________________________________________________________________106______________ 
 2hk8(F) : MINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNTDWIGFLKSLKSLIPE 
         :                                                                                                                          
 2hk9(D) : MINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNTDWIGFLKSLKSLIPE 
           _______________________________________________________________________________________________________106______________ 

           __________________________________________________________________________________________________________________237___ 
 2hk8(F) : VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIYKETKLLKKAKEKGAKLLDGLPMLL 
         :                                                                                                                          
 2hk9(D) : VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIYKETKLLKKAKEKGAKLLDGLPMLL 
           __________________________________________________________________________________________________________________237___ 

           __________________________                                                                                               
 2hk8(F) : WQGIEAFKIWNGCEVPYSVAERSV**                                                                                               
         :                                                                                                                          
 2hk9(D) : WQGIEAFKIWNGCEVPYSVAERSVRD                                                                                               
           __________________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.1
Translation
(A) 		-0.3
Closure
(%) 		95.2
Bending Residues
( green ) 		  106 - 114
  237 - 241
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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