Siderophore Periplasmic Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Siderophore Periplasmic Binding Protein
  Conformer 1
(PDB) 		5dh0 (B)
  Conformer 2
(PDB) 		5dh1 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 133 0.3   192 - 195   220 - 221   224 - 226   230 - 342   349 - 359
2 132 0.47   95 - 191   196 - 219   222 - 223   227 - 229   343 - 348

Sequence


           _________________________________________________________________________________________________________190__195_______ 
 5dh0(B) : HHHHHSeIPADPQRIVALEFGTEVVLEAGIEPVGVIEPVATLYTAEEFEQLSTYPVVQSASLEINMEAIAEAQPDLIIGGVRVESHDEYVGIREDLEKIAPTVFFDFDGAGSGLRNMTLE 
         :                                                                                                                          
 5dh1(B) : *HHHHS--pADPQRIVALEFGTEVVLEAGIEPVGVIEPVATLYTAEEFEQLSTYPVVQSASLEINMEAIAEAQPDLIIGGVRVESHDEYVGIREDLEKIAPTVFFDFDGAGSGLRNMTLE 
           _________________________________________________________________________________________________________190__195_______ 

           ______________219____226________________________________________________________________________________________________ 
 5dh0(B) : LSRVVGDGERAEAEQQRFEERVEEISTAYADQLADTTFALVFGVDGEFAVVNTNAWGGEILHTLGAKQSKAQQPAGENFAAFYSYEEIDELSDADVIFYETDAQENPDPFTEALLEQKLW 
         :                                                                                                                          
 5dh1(B) : LSRVVGDGERAEAEQQRFEERVEEISTAYADQLADTTFALVFGVDGEFAVVNTNAWGGEILHTLGAKQSKAQQPAGENFAAFYSYEEIDELSDADVIFYETDAQENPDPFTEALLEQKLW 
           ______________219____226________________________________________________________________________________________________ 

           _________________342___348_____________                                                                                  
 5dh0(B) : QSLPAVEAGQVHPLRYSAARTYAQANIVLDQIEEVLKGL                                                                                  
         :                                                                                                                          
 5dh1(B) : QSLPAVEAGQVHPLRYSAARTYAQANIVLDQIEEVLKGL                                                                                  
           _________________342___348_____________                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.3
Translation
(A) 		-0.2
Closure
(%) 		60.6
Bending Residues
( green ) 		  190 - 193
  195 - 196
  219 - 224
  226 - 227
  229 - 230
  342 - 343
  348 - 349
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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