Transducin (Alpha Subunit)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transducin (Alpha Subunit)
  Conformer 1
(PDB) 		1tnd (A)
  Conformer 2
(PDB) 		1tag  
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 256 0.71   34 - 168   188 - 192   218 - 333
2 20 0.85   169 - 187   193 - 193

Sequence


           ________________________________________________________________________________________________________________________ 
 1tnd(A) : ARTVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLND 
         :                                                                                                                          
 1tag    : ARTVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLND 
           ________________________________________________________________________________________________________________________ 

           ___________________168________________187_______________________________________________________________________________ 
 1tnd(A) : SAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNK 
         :                                                                                                                          
 1tag    : SAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNK 
           ___________________168________________187_______________________________________________________________________________ 

           ___________________________________________________________________________________                                      
 1tnd(A) : KDVFSEKIKKAHLSICFPDYNGPNTYEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL                                      
         :                                                                                                                          
 1tag    : KDVFSEKIKKAHLSICFPDYNGPNTYEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIII*********                                      
           ___________________________________________________________________________________                                      

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.8
Translation
(A) 		-0.1
Closure
(%) 		56.9
Bending Residues
( green ) 		  168 - 169
  187 - 188
  190 - 218
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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