Tryptophan Synthase Beta Chain 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophan Synthase Beta Chain 1
  Conformer 1
(PDB) 		5dw0 (A)
  Conformer 2
(PDB) 		5vm5 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 277 0.38   7 - 90   102 - 102   182 - 280   284 - 297   303 - 383
2 98 0.68   91 - 101   103 - 181   281 - 283   298 - 302

Sequence


           ________________________________________________________________________________________90________101___________________ 
 5dw0(A) : MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGAL 
         :                                                                                                                          
 5vm5(D) : MWFGEFGGQYVPETLVGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAHKTNNAIGQALLAKLMGKTRLIAETGAGQHGVATAMAGAL 
           ________________________________________________________________________________________90________101___________________ 

           __________________________________________________________181___________________________________________________________ 
 5dw0(A) : LGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 
         :                                                                                                                          
 5vm5(D) : LGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 
           __________________________________________________________181___________________________________________________________ 

           _____________________________________280____________295_________________________________________________________________ 
 5dw0(A) : NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM 
         :                                                                                                                          
 5vm5(D) : NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQD--gQIKPSHSIAPGLDYPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM 
           _____________________________________280____________295_________________________________________________________________ 

           ____________________________                                                                                             
 5dw0(A) : SRDEIIIVNLSGRGDKDLDIVLKVSGNV                                                                                             
         :                                                                                                                          
 5vm5(D) : SRDEIIIVNLSGRGDKDLDIVLKAS***                                                                                             
           ____________________________                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.0
Translation
(A) 		0.0
Closure
(%) 		62.6
Bending Residues
( green ) 		  90 - 91
  101 - 103
  181 - 182
  280 - 292
  295 - 304
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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