Soluble Tumor Necrosis Factor Receptor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Soluble Tumor Necrosis Factor Receptor 1
  Conformer 1
(PDB) 		1ext (A)
  Conformer 2
(PDB) 		1ncf (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 36 0.93   76 - 83   97 - 118   126 - 130   134 - 134
2 73 0.67   16 - 75   84 - 96
3 29 1.01   119 - 125   131 - 133   135 - 153

Sequence


           ____________________________________________________________74_______83_________94____________________117_____125__130__ 
 1ext(A) : SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEK 
         :                                                                                                                          
 1ncf(B) : *VCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEK 
           ____________________________________________________________74_______83_________94____________________117_____125__130__ 

           ________________________________________                                                                                 
 1ext(A) : QNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQIEN                                                                                 
         :                                                                                                                          
 1ncf(B) : QNTVCTCHAGFFLRENECVSCSN*****************                                                                                 
           ________________________________________                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		29.6
Translation
(A) 		0.3
Closure
(%) 		34.3
Bending Residues
( green ) 		  74 - 76
  83 - 86
  94 - 101
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		36.6
Translation
(A) 		0.1
Closure
(%) 		9.2
Bending Residues
( green ) 		  117 - 120
  125 - 126
  130 - 131
  133 - 135
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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