Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Galactose 4-Epimerase
  Conformer 1
(PDB) 		1ek6 (B)
  Conformer 2
(PDB) 		1lrk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 252 1.43   5 - 141   143 - 199   242 - 274   310 - 322   327 - 344
2 82 1.03   142 - 142   200 - 241   275 - 309   323 - 326

Sequence


           ________________________________________________________________________________________________________________________ 
 1ek6(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 
         :                                                                                                                          
 1lrk(A) : *MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLP----VIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRA 
           ________________________________________________________________________________________________________________________ 

           _________________141_______________________________________________________199______________________________________240_ 
 1ek6(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 
         :                                                                                                                          
 1lrk(A) : ANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 
           _________________133_______________________________________________________191______________________________________232_ 

           ______________________________274________________________________309__________322________________________                
 1ek6(B) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT                
         :                                                                                                                          
 1lrk(A) : IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPACWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD                
           ______________________________266________________________________301__________314________________________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.5
Translation
(A) 		-0.5
Closure
(%) 		72.8
Bending Residues
( green ) 		  141 - 143
  199 - 200
  240 - 242
  274 - 275
  309 - 310
  322 - 327
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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