DynDom - Protein Domain Motions

Udp-Sugar Pyrophosphorylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-Sugar Pyrophosphorylase
Conformer 1 (PDB)	3ogz (A)
Conformer 2 (PDB)	3oh0 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	433	0.44	76 - 194 231 - 322 324 - 379 413 - 608
2	141	0.25	5 - 75 195 - 230 323 - 323 380 - 412

Sequence

`_______________________________________________________________________75_______________________________________________` `3ogz(A) : NPSNSNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAG` `:` `3oh0(A) : NPSNSNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAG` `_______________________________________________________________________75_______________________________________________` `_____________________________________________________________________194_________________________________230____________` `3ogz(A) : GLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVaQPLVN` `:` `3oh0(A) : GLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVaQPLVN` `_____________________________________________________________________194_________________________________230____________` `_______________________________________________________________322_____________________________________________379______` `3ogz(A) : DWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRAL---gFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFIN` `:` `3oh0(A) : DWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDgFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFIN` `_______________________________________________________________322_____________________________________________379______` `________________________412_____________________________________________________________________________________________` `3ogz(A) : PKYSDETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERFSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCA` `:` `3oh0(A) : PKYSDETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERFSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCA` `________________________412_____________________________________________________________________________________________` `_________________________________________________________________________________________________________` `3ogz(A) : SSGSLDDLARVFPTPEKVHIDQHSTLIVEGRVIIESLELYGALTIRGPTDSMALPHVVRNAVVRNAGWSVHAILSLC----sRLSEVDRIRGFVLKKTAMAVMDC` `:` `3oh0(A) : SSGSLDDLARVFPTPEKVHIDQHSTLIVEGRVIIESLELYGALTIRGPTDSMALPHVVRNAVVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKKTAMAVMDC` `_________________________________________________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	2.5
Translation (A)	-0.1
Closure (%)	98.6
Bending Residues ( green )	75 - 76 194 - 195 230 - 231 322 - 324 379 - 380 412 - 413
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

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