DynDom - Protein Domain Motions

Glutamine--Fructose-6-Phosphate Aminotransferase [Isomerizing] 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glutamine--Fructose-6-Phosphate Aminotransferase [Isomerizing] 1
Conformer 1 (PDB)	6r4e (A)
Conformer 2 (PDB)	6r4e (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	367	0.58	32 - 32 309 - 674
2	285	1.97	4 - 31 33 - 308 675 - 679

Sequence

`___________________________30___________________________________________________________________________________________` `6r4e(A) : CGIFAYLNYHVPRTRREILETLIKGLQRLEYRGYDSAGVGFDGGNDKDWEANACKIQLIKKKGKVKALDEEVHKQQDMDLDIEFDVHLGIAHTRWATHGEPSPVNSHPQRSDKNNEFIVI` `:` `6r4e(B) : CGIFAYLNYHVPRTRREILETLIKGLQRLEYRGYDSAGVGFDGGNDKDWEANACKIQLIKKKGKVKALDEEVHKQQDMDLDIEFDVHLGIAHTRWATHGEPSPVNSHPQRSDKNNEFIVI` `___________________________30___________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `6r4e(A) : HNGIITNYKDLKKFLESKGYDFESETDTETIAKLVKYMYDNRESQDTSFTTLVERVIQQLEGAFALVFKSVHFPGQAVGTRRGSPLLIGVRSEHKLSTDHIPILYRrVDtTCLFPVEEKA` `:` `6r4e(B) : HNGIITNYKDLKKFLESKGYDFESETDTETIAKLVKYMYDNRESQDTSFTTLVERVIQQLEGAFALVFKSVHFPGQAVGTRRGSPLLIGVRSEHKLSTDHIPILYR-vDtTCLFPVEEKA` `________________________________________________________________________________________________________________________` `______________________________________________308_______________________________________________________________________` `6r4e(A) : VEYYFASDASAVIEHTNRVIFLEDDDVAAVVDGRLSIHRIdHPGRAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYH` `:` `6r4e(B) : VEYYFASDASAVIEHTNRVIFLEDDDVAAVVDGRLSIHR-----rAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYH` `______________________________________________308_______________________________________________________________________` `________________________________________________________________________________________________________________________` `6r4e(A) : AGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISM` `:` `6r4e(B) : AGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISM` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `6r4e(A) : QERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVI` `:` `6r4e(B) : QERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVI` `________________________________________________________________________________________________________________________` `_______________________________________________669____________` `6r4e(A) : CDKEDTETIKNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE` `:` `6r4e(B) : CDKEDTETIKNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE` `_______________________________________________669____________`

Morph

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Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	18.4
Translation (A)	-0.2
Closure (%)	82.7
Bending Residues ( green )	30 - 37 308 - 313 669 - 679
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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