Glutamate Receptor 2,Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2,Glutamate Receptor 2
  Conformer 1
(PDB) 		5oew (A)
  Conformer 2
(PDB) 		4u2p (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 140 0.68   3 - 97   184 - 185   203 - 245
2 103 1.25   98 - 183   186 - 202

Sequence


           ________________________________________________________________________________________________________________________ 
 5oew(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 4u2p(A) : IQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5oew(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 4u2p(A) : KFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5oew(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 4u2p(A) : DSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5oew(A) : **********************************GANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 
         :                                                                                                                          
 4u2p(A) : GYWSEVDKMVVTLTEDDTSGLEQKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVI 
           ________________________________________________________________________________________________________________________ 

           _________97_____________________________________________________________________________________________________________ 
 5oew(A) : IAPLTITLVREEVIDFSK----------------------------------------------------------------------------PFMSLGISIMIKKGTPIESAEDLSKQ 
         :                                                                                                                          
 4u2p(A) : DFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMAIVFAYIGVSVVLFLVSRpRSLSARIVAGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTK 
           ________500_____________________________________________________________________________________________________________ 

           __________________________________________________183________________202________________________________________________ 
 5oew(A) : TEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKL 
         :                                                                                                                          
 4u2p(A) : EFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAK 
           __________________________________________________709________________728________________________________________________ 

           ___________________________________                                                                                      
 5oew(A) : KNKWWYDKGEC************************                                                                                      
         :                                                                                                                          
 4u2p(A) : DSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVAL                                                                                      
           ___________________________________                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.3
Translation
(A) 		0.1
Closure
(%) 		100.0
Bending Residues
( green ) 		  97 - 98
  183 - 186
  202 - 204
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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