Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glyceraldehyde-3-Phosphate Dehydrogenase
  Conformer 1
(PDB) 		1dc6 (A)
  Conformer 2
(PDB) 		1gad (O)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 201 0.32   2 - 149   155 - 157   171 - 172   215 - 218   236 - 246   264 - 267   270 - 272   283 - 291   293 - 293   304 - 304   313 - 328
2 125 0.26   150 - 154   158 - 170   173 - 214   219 - 235   247 - 263   268 - 269   273 - 282   292 - 292   294 - 303   305 - 312

Sequence


           ________________________________________________________________________________________________________________________ 
 1dc6(A) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
         :                                                                                                                          
 1gad(O) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
           ________________________________________________________________________________________________________________________ 

           __________________________149__154_____________170________________________________________213___________________235_____ 
 1dc6(A) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
         :                                                                                                                          
 1gad(O) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
           __________________________149__154_____________170________________________________________213___________________235_____ 

           ___246______________263_267__272_______282______291_________303______312__________________                               
 1dc6(A) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
         :                                                                                                                          
 1gad(O) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
           ___246______________263_267__272_______282______291_________303______312__________________                               

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.6
Translation
(A) 		0.1
Closure
(%) 		67.5
Bending Residues
( green ) 		  149 - 150
  154 - 155
  157 - 158
  170 - 173
  213 - 220
  235 - 236
  246 - 247
  263 - 264
  267 - 270
  272 - 273
  282 - 283
  291 - 294
  303 - 305
  312 - 313
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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