Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Guanylate Kinase
  Conformer 1
(PDB) 		2qor (A)
  Conformer 2
(PDB) 		1z6g (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 133 1.88   5 - 35   86 - 190
2 50 0.71   36 - 85

Sequence


           ________________________________35________________________________________________85____________________________________ 
 2qor(A) : ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFE-nINGVKQLKESKHIQDGIY 
         :                                                                                                                          
 1z6g(A) : *NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALY 
           ________________________________35________________________________________________85____________________________________ 

           ___________________________________________________________________________                                              
 2qor(A) : IFVKPPSIDILLGRLKNRNTEKPEEINKRqE-LTRE-dEADKVGFNYFIVNDDLARTYAELREYLLGSYPQLRGG                                              
         :                                                                                                                          
 1z6g(A) : IFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLLNSYIHL***                                              
           ___________________________________________________________________________                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.4
Translation
(A) 		-0.2
Closure
(%) 		66.8
Bending Residues
( green ) 		  35 - 36
  85 - 86
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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