Phnd, Subunit Of Alkylphosphonate Abc Transporter

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phnd, Subunit Of Alkylphosphonate Abc Transporter
  Conformer 1
(PDB) 		3s4u (A)
  Conformer 2
(PDB) 		3quj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 173 1.51   7 - 89   203 - 304
2 113 0.74   90 - 202

Sequence


           __________________________________________________________________________________88____________________________________ 
 3s4u(A) : KALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGD 
         :                                                                                                                          
 3quj(A) : KALNFGIISTESQQNLKPQWTPFLQD-eKKLGVKVNAFFAPDYAGIIQG-rFNKVDIAWYGNLSA-eAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGD 
           __________________________________________________________________________________88____________________________________ 

           __________________________________________________________________________201___________________________________________ 
 3s4u(A) : PNSTSGFLVPGYYVFAKNNISASDFKRTVNAGAETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLGWA 
         :                                                                                                                          
 3quj(A) : PNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFF-nYGKTPEEKAVLERLGWA 
           __________________________________________________________________________201___________________________________________ 

           ___________________________________________________________________                                                      
 3s4u(A) : PFRASSDLQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALSAMSS*****                                                      
         :                                                                                                                          
 3quj(A) : PFRASSDLQLVPIRQLALFKE-qSVKDNk-------LAKTTAIQAQLDDLDRLNNALSAsSVSKAVQ                                                      
           ___________________________________________________________________                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		74.7
Translation
(A) 		-0.5
Closure
(%) 		98.5
Bending Residues
( green ) 		  88 - 93
  201 - 204
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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