Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglycerate Kinase
  Conformer 1
(PDB) 		1vpe (A)
  Conformer 2
(PDB) 		16pk  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 207 2.61   4 - 179   202 - 209   352 - 352   372 - 395
2 182 1.67   180 - 201   210 - 351   353 - 371

Sequence


           ________________________________________________________________________________________________________________________ 
 1vpe(A) : EKMTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPS------------PEF----SLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEE 
         :                                                                                                                          
 16pk    : EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCL--NAADVVSK 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________179_______________197_________209___________ 
 1vpe(A) : LKEGEVLLLENTRFHPGE----TKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFIPS-VAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGA 
         :                                                                                                                          
 16pk    : MSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGA 
           ____________________________________________________________________________201_______________219_________231___________ 

           ________________________________________________________________________________________________________________________ 
 1vpe(A) : MMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIA 
         :                                                                                                                          
 16pk    : MAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFK-AVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMG 
           ________________________________________________________________________________________________________________________ 

           _________351_________________371____________________________                                                             
 1vpe(A) : ALT-EKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIKKA                                                             
         :                                                                                                                          
 16pk    : RGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK**                                                             
           _________373_________________393____________________________                                                             

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.5
Translation
(A) 		-2.2
Closure
(%) 		75.3
Bending Residues
( green ) 		  179 - 180
  197 - 204
  209 - 210
  351 - 353
  371 - 372
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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