6-Phosphogluconate Dehydrogenase Nad-Binding

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 6-Phosphogluconate Dehydrogenase Nad-Binding
  Conformer 1
(PDB) 		7xr5 (B)
  Conformer 2
(PDB) 		7xe8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 159 0.56   12 - 169   175 - 175
2 125 0.44   170 - 174   176 - 295

Sequence


           ________________________________________________________________________________________________________________________ 
 7xr5(B) : GPAAVTVLGLGRMGSALAAAFLAAGHSTTVWNRTPGKADELAARGARRAGSVAEAVAAAPLVVVCVADDEAVHQLLDPLDGALAGRTLVNLTTGTSAQARANAAWAKERGAAFLDGAIMA 
         :                                                                                                                          
 7xe8(A) : GPAAVTVLGLGRMGSALAAAFLAAGHSTTVWNRTPGKADELAARGARRAGSVAEAVAAAPLVVVCVADDEAVHQLLDPLDGALAGRTLVNLTTGTSAQARANAAWAKERGAAFLDGAIMA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________169________________________________________________________________________________ 
 7xr5(B) : VPEDIATGDAVLLYSGPRDAFDAYEEALRVLAPAGTTHLGGDAGLAALHDLALLGIMWGVLNGFLHGAALLGTAGVRAGDFAPLAARMTTVVAGYVTAAAPEVDAGSYPAGDATLTVHQE 
         :                                                                                                                          
 7xe8(A) : VPEDIATGDAVLLYSGPRDAFDAYEEALRVLAPAGTTHLGGDAGLAALHDLALLGIMWGVLNGFLHGAALLGTAGVRAGDFAPLAARMTTVVAGYVTAAAPEVDAGSYPAGDATLTVHQE 
           _____________________________________169________________________________________________________________________________ 

           _________________________________________________                                                                        
 7xr5(B) : AMRHLAEESEALGVNAELPRFLQLLAGRAVAEGHAESGYSALVEQFRKA                                                                        
         :                                                                                                                          
 7xe8(A) : AMRHLAEESEALGVNAELPRFLQLLAGRAVAEGHAESGYSALVEQFRK*                                                                        
           _________________________________________________                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.0
Translation
(A) 		0.1
Closure
(%) 		80.0
Bending Residues
( green ) 		  169 - 177
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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