DynDom - Protein Domain Motions

Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Putative Enzyme Ydif
Conformer 1 (PDB)	2ahw (C)
Conformer 2 (PDB)	2ahu (C)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	374	0.35	6 - 276 311 - 331 333 - 333 336 - 372 377 - 381 385 - 414 416 - 417 447 - 463 525 - 527
2	124	0.5	284 - 310 332 - 332 334 - 335 373 - 376 382 - 384 415 - 415 418 - 446 464 - 524

Sequence

`________________________________________________________________________________________________________________________` `2ahw(C) : VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQ` `:` `2ahu(C) : VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQ` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2ahw(C) : TLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIP` `:` `2ahu(C) : TLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEV-yLDALVIAQAVHNNGGIV--qVQK-vKKATLHPKSVRIP` `________________________________________________________________________________________________________________________` `______________________________276____________________305______________________330__________________________________372_3` `2ahw(C) : GYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD-pLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGIT--aNVNTRAILDMTSQFDFYHGGGLDVC` `:` `2ahu(C) : GYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLDlPLNQRKLVARRALFE-rKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSgANVNTRAILD-tSQFDFYHGGGLDVC` `______________________________276____________________305______________________330__________________________________372_3` `76__381______________________________414_____________________________446______________463_______________________________` `2ahw(C) : YLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKD` `:` `2ahu(C) : YLSFAEVDQHGNVGVHKFNGKI-gTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKD` `76__381______________________________414_____________________________446______________463_______________________________` `___________________________524_____` `2ahw(C) : ILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEA` `:` `2ahu(C) : ILDK-dFTPVISPELKL-dERLFIDAA-gFVLPEA` `___________________________524_____`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	3.5
Translation (A)	-0.1
Closure (%)	95.1
Bending Residues ( green )	276 - 284 305 - 320 330 - 336 372 - 373 376 - 377 381 - 382 384 - 385 414 - 418 446 - 447 463 - 464 524 - 527
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

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